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Gm39559 predicted gene, 39559 [ Mus musculus (house mouse) ]

Gene ID: 105243774, updated on 22-Oct-2024

Summary

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Official Symbol
Gm39559provided by MGI
Official Full Name
predicted gene, 39559provided by MGI
Primary source
MGI:MGI:5622444
See related
Ensembl:ENSMUSG00000143016 AllianceGenome:MGI:5622444
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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Genomic context

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See Gm39559 in Genome Data Viewer
Location:
12 F2; 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (117309173..117311615)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type N polypeptide 2 Neighboring gene STARR-seq mESC enhancer starr_33420 Neighboring gene predicted gene, 53773 Neighboring gene predicted gene 5441 Neighboring gene microRNA 153 Neighboring gene STARR-positive B cell enhancer mm9_chr12:118623787-118624087 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:118685906-118686089 Neighboring gene predicted gene, 31482 Neighboring gene STARR-positive B cell enhancer ABC_E4048 Neighboring gene Rap guanine nucleotide exchange factor (GEF) 5 Neighboring gene STARR-seq mESC enhancer starr_33424 Neighboring gene STARR-seq mESC enhancer starr_33425 Neighboring gene predicted gene, 53774

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000078.7 Chromosome 12 Reference GRCm39 C57BL/6J

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    117309173..117311615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004937822.1 RNA Sequence

    Related
    ENSMUST00000374388.1

  2. XR_004937821.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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Research Materials