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Gm39876 predicted gene, 39876 [ Mus musculus (house mouse) ]

Gene ID: 105244229, updated on 17-Aug-2024

Summary

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Official Symbol
Gm39876provided by MGI
Official Full Name
predicted gene, 39876provided by MGI
Primary source
MGI:MGI:5622761
See related
AllianceGenome:MGI:5622761
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in thymus adult (RPKM 30.2), duodenum adult (RPKM 17.4) and 28 other tissues See more
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Genomic context

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See Gm39876 in Genome Data Viewer
Location:
2 E1; 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (91761895..91764861)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (91932217..91934516)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05122 Neighboring gene autophagy/beclin 1 regulator 1 Neighboring gene STARR-seq mESC enhancer starr_05123 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:91788365-91788474 Neighboring gene cholinergic receptor, muscarinic 4 Neighboring gene STARR-positive B cell enhancer ABC_E2042 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:91797390-91797604 Neighboring gene diacylglycerol kinase zeta Neighboring gene microRNA 6999 Neighboring gene midkine Neighboring gene STARR-seq mESC enhancer starr_05126 Neighboring gene cAMP responsive element binding protein 3-like 1 Neighboring gene STARR-positive B cell enhancer ABC_E4479

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    91761895..91764861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_866530.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials