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Gm42109 predicted gene, 42109 [ Mus musculus (house mouse) ]

Gene ID: 105246912, updated on 17-Aug-2024

Summary

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Official Symbol
Gm42109provided by MGI
Official Full Name
predicted gene, 42109provided by MGI
Primary source
MGI:MGI:5624994
See related
AllianceGenome:MGI:5624994
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm43448
Expression
Biased expression in liver adult (RPKM 2.1), liver E18 (RPKM 0.9) and 3 other tissues See more
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Genomic context

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See Gm42109 in Genome Data Viewer
Location:
5 E1; 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (90722004..90732854, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (90574145..90584995, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene afamin Neighboring gene zinc finger, BED domain containing 4 pseudogene Neighboring gene albumin superfamily member 1 Neighboring gene STARR-positive B cell enhancer ABC_E4764 Neighboring gene Ras association (RalGDS/AF-6) domain family member 6 Neighboring gene STARR-seq mESC enhancer starr_13601 Neighboring gene STARR-seq mESC enhancer starr_13602 Neighboring gene STARR-seq mESC enhancer starr_13603 Neighboring gene predicted gene, 36084

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    90722004..90732854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_880417.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials