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LOC105369439 uncharacterized LOC105369439 [ Homo sapiens (human) ]

Gene ID: 105369439, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105369439
Gene description
uncharacterized LOC105369439
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105369439 in Genome Data Viewer
Location:
11q21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (95466045..95481133)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (95473229..95488332)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:94884031-94884572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:94883489-94884030 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3847 Neighboring gene lncRNA imatinib upregulated Neighboring gene sestrin 3 Neighboring gene uncharacterized LOC100129203 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3848 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3849 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:94964745-94965384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:94965385-94966024 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:94981794-94982294 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5416 Neighboring gene Sharpr-MPRA regulatory region 282 Neighboring gene VISTA enhancer hs2531 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:95074595-95075094 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:95092304-95093503 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3850 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:95180437-95180967 Neighboring gene MPRA-validated peak1408 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr11:95209557-95210058 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:95215468-95216018 Neighboring gene uncharacterized LOC105369440 Neighboring gene Sharpr-MPRA regulatory region 12150 Neighboring gene uncharacterized LOC105369441

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    95466045..95481133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947928.3 RNA Sequence

  2. XR_947927.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    95473229..95488332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081976.1 RNA Sequence

  2. XR_007081975.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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