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LOC105369890 uncharacterized LOC105369890 [ Homo sapiens (human) ]

Gene ID: 105369890, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105369890
Gene description
uncharacterized LOC105369890
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105369890 in Genome Data Viewer
Location:
12q21.33
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (89920142..90112289)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (89902031..90089619)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984543 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4699 Neighboring gene RNA, U6 small nuclear 148, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6711 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6713 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:90277501-90278426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:90313523-90314022 Neighboring gene bromodomain and WD repeat domain containing 1 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6714 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:90359698-90360238 Neighboring gene long intergenic non-protein coding RNA 2399 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:90484856-90485458 Neighboring gene uncharacterized LOC105369892 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6715 Neighboring gene long intergenic non-protein coding RNA 2392

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    89920142..90112289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749246.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    89902031..90089619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082913.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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