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LOC105370275 uncharacterized LOC105370275 [ Homo sapiens (human) ]

Gene ID: 105370275, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105370275
Gene description
uncharacterized LOC105370275
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105370275 in Genome Data Viewer
Location:
13q31.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (80121791..80166394, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (79349816..79394423, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 382 Neighboring gene uncharacterized LOC124903273 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr13:80510429-80511628 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:80540344-80541018 Neighboring gene long intergenic non-protein coding RNA 1080 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7859 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:80707181-80707680 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:80721652-80721755 Neighboring gene Sharpr-MPRA regulatory region 9192 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:80763580-80764573 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:80766325-80767524 Neighboring gene uncharacterized LOC101927238 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:80792397-80792897 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5428 Neighboring gene sprouty RTK signaling antagonist 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    80121791..80166394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_942116.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    79349816..79394423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083783.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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