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LOC105371642 uncharacterized LOC105371642 [ Homo sapiens (human) ]

Gene ID: 105371642, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105371642
Gene description
uncharacterized LOC105371642
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371642 in Genome Data Viewer
Location:
1q25.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (182110071..182118648)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (181465793..181474375)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1615 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:182025348-182025878 Neighboring gene zinc finger protein 648 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2196 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:182070081-182070851 Neighboring gene Sharpr-MPRA regulatory region 10342 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:182112509-182112685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:182112694-182113362 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:182113363-182114030 Neighboring gene YPEL5 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 1344 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:182199023-182199595 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:182218347-182218848 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:182231616-182231824 Neighboring gene FOXA motif-containing MPRA enhancer 10/11 Neighboring gene Sharpr-MPRA regulatory region 4291 Neighboring gene NANOG hESC enhancer GRCh37_chr1:182270844-182271361 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1617

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    182110071..182118648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_922341.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    181465793..181474375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070907.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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