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LOC105372346 uncharacterized LOC105372346 [ Homo sapiens (human) ]

Gene ID: 105372346, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105372346
Gene description
uncharacterized LOC105372346
See related
Ensembl:ENSG00000297628
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372346 in Genome Data Viewer
Location:
19q11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (27983224..28000379, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2987 Neighboring gene uncharacterized LOC105372348 Neighboring gene uncharacterized LOC105372347 Neighboring gene zinc finger protein 709 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14402 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14403 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14404 Neighboring gene NANOG hESC enhancer GRCh37_chr19:28621443-28621988 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:28659458-28660167 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:28660168-28660878 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:28726469-28727180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:28727181-28727891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:28760939-28761439 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr19:28781600-28782131 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr19:28794338-28794874 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr19:28804274-28805473 Neighboring gene MPRA-validated peak3420 silencer Neighboring gene MPRA-validated peak3419 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr19:28881947-28882183 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:28890814-28891468 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:28891469-28892122 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:28893490-28894450 Neighboring gene MPRA-validated peak3422 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:28913828-28914513 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:28916721-28917240 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:28917241-28917759 Neighboring gene Sharpr-MPRA regulatory region 924 Neighboring gene SHC binding and spindle associated 1 pseudogene Neighboring gene uncharacterized LOC105372349 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:28936697-28937404 Neighboring gene Sharpr-MPRA regulatory region 12624 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:29036304-29036510 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:29080318-29080960 Neighboring gene uncharacterized LOC124904681 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr19:29096818-29098017 Neighboring gene endogenous retrovirus group E member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000019.10 Chromosome 19 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    27983224..28000379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007067373.1 RNA Sequence

    Related
    ENST00000749381.1

  2. XR_007067372.1 RNA Sequence

    Related
    ENST00000749382.1

  3. XR_007067374.1 RNA Sequence

    Related
    ENST00000749384.1

  4. XR_935883.4 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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