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LOC105372594 uncharacterized LOC105372594 [ Homo sapiens (human) ]

Gene ID: 105372594, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105372594
Gene description
uncharacterized LOC105372594
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in stomach (RPKM 1.6), lung (RPKM 0.5) and 2 other tissues See more
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Genomic context

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See LOC105372594 in Genome Data Viewer
Location:
20q11.21
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (33298213..33299853)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (35025411..35027051)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372593 Neighboring gene BPI fold containing family A member 1 Neighboring gene ribosomal protein L12 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:31869092-31869592 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:31869593-31870093 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:31877426-31878386 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:31878387-31879347 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17727 Neighboring gene BPI fold containing family B member 1 Neighboring gene uncharacterized LOC124904888 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:31899476-31899976 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:31899977-31900477 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:31909477-31909976 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:31911786-31912403 Neighboring gene BPI fold containing family B member 5, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17728 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:31934530-31935364 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:31937032-31937864 Neighboring gene BPI fold containing family B member 9, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    33298213..33299853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_936685.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    35025411..35027051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089577.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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