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LOC105373401 uncharacterized LOC105373401 [ Homo sapiens (human) ]

Gene ID: 105373401, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105373401
Gene description
uncharacterized LOC105373401
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373401 in Genome Data Viewer
Location:
2p25.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (6300375..6313236, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (6321952..6334821, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:6114361-6114862 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:6115742-6116395 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:6120871-6121617 Neighboring gene sciatic injury induced lincRNA upregulator of SOX11 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:6135557-6136756 Neighboring gene uncharacterized LOC400940 Neighboring gene microRNA 7158 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:6193971-6194712 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:6232422-6233621 Neighboring gene NANOG hESC enhancer GRCh37_chr2:6253851-6254352 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:6289007-6289241 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15240 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:6378134-6379333 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:6396128-6396341 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:6423042-6423564 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:6431337-6432536 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15241 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15243 Neighboring gene long intergenic non-protein coding RNA 1247 Neighboring gene uncharacterized LOC105373402

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    6300375..6313236 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739180.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    6321952..6334821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071528.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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