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LOC105373456 uncharacterized LOC105373456 [ Homo sapiens (human) ]

Gene ID: 105373456, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105373456
Gene description
uncharacterized LOC105373456
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 3.8), stomach (RPKM 0.5) and 7 other tissues See more
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Genomic context

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See LOC105373456 in Genome Data Viewer
Location:
2p24.2-p24.1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (18560176..19089356)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (18592716..19122130)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373451 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:18513234-18513870 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11195 Neighboring gene uncharacterized LOC105373454 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:18633458-18633722 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:18637372-18637948 Neighboring gene MPRA-validated peak3612 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr2:18727890-18728410 Neighboring gene Sharpr-MPRA regulatory region 12735 Neighboring gene NT5C1B-RDH14 readthrough Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15357 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15360 Neighboring gene RNA, U6 small nuclear 1215, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:18821105-18821605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:18820604-18821104 Neighboring gene Sharpr-MPRA regulatory region 8729 Neighboring gene 5'-nucleotidase, cytosolic IB Neighboring gene retinol dehydrogenase 14 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:18845994-18847193 Neighboring gene NANOG hESC enhancer GRCh37_chr2:18958528-18959297 Neighboring gene long intergenic non-protein coding RNA 1376 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:19258635-19259136 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:19259137-19259636 Neighboring gene uncharacterized LOC124907739 Neighboring gene Sharpr-MPRA regulatory region 11737 Neighboring gene uncharacterized LOC124907738 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19384517-19385018 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19385019-19385518 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19404229-19404728 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:19428093-19429292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19505267-19505860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19505861-19506454 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15363 Neighboring gene microRNA 4757 Neighboring gene odd-skipped related transcription factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    18560176..19089356
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086234.1 RNA Sequence

  2. XR_001739304.3 RNA Sequence

  3. XR_007086229.1 RNA Sequence

  4. XR_007086231.1 RNA Sequence

  5. XR_007086230.1 RNA Sequence

  6. XR_427002.4 RNA Sequence

  7. XR_001739313.2 RNA Sequence

  8. XR_007086227.1 RNA Sequence

  9. XR_001739311.2 RNA Sequence

  10. XR_007086228.1 RNA Sequence

  11. XR_007086232.1 RNA Sequence

  12. XR_939776.3 RNA Sequence

  13. XR_007086233.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    18592716..19122130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071850.1 RNA Sequence

  2. XR_007071839.1 RNA Sequence

  3. XR_007071847.1 RNA Sequence

  4. XR_007071841.1 RNA Sequence

  5. XR_007071844.1 RNA Sequence

  6. XR_007071842.1 RNA Sequence

  7. XR_007071843.1 RNA Sequence

  8. XR_007071845.1 RNA Sequence

  9. XR_007071838.1 RNA Sequence

  10. XR_007071846.1 RNA Sequence

  11. XR_007071840.1 RNA Sequence

  12. XR_007071848.1 RNA Sequence

  13. XR_007071849.1 RNA Sequence

Nucleotide Protein
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