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LOC105373530 uncharacterized LOC105373530 [ Homo sapiens (human) ]

Gene ID: 105373530, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105373530
Gene description
uncharacterized LOC105373530
See related
Ensembl:ENSG00000234162
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373530 in Genome Data Viewer
Location:
2q12.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (105928088..105937665, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (106389390..106398979, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985929 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16317 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_52468 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:106315285-106315464 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11841 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11842 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16318 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16319 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16320 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106378480-106379325 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106385690-106386192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106386193-106386695 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16321 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16322 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:106394362-106394862 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:106399357-106399857 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106403143-106403714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16324 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16326 Neighboring gene NCK adaptor protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11843 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16327 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11844 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16331 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106428458-106428958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:106428959-106429459 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16333 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16335 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16334 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106497364-106498144 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:106498145-106498923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16336 Neighboring gene uncharacterized LOC105373531 Neighboring gene NANOG hESC enhancer GRCh37_chr2:106567089-106567923 Neighboring gene uncharacterized LOC124906055 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:106669310-106670509 Neighboring gene ECRG4 augurin precursor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    105928088..105937665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_923142.3 RNA Sequence

    Related
    ENST00000820631.1

  2. XR_001739627.2 RNA Sequence

  3. XR_923143.3 RNA Sequence

    Related
    ENST00000820630.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    106389390..106398979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072353.1 RNA Sequence

  2. XR_007072355.1 RNA Sequence

  3. XR_007072354.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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