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LOC105373899 uncharacterized LOC105373899 [ Homo sapiens (human) ]

Gene ID: 105373899, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373899
Gene description
uncharacterized LOC105373899
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373899 in Genome Data Viewer
Location:
2q36.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (221637529..221738686)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (222122633..222223787)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene EPH receptor A4 Neighboring gene transmembrane protein 256 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12364 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12365 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12366 Neighboring gene NANOG hESC enhancer GRCh37_chr2:222441193-222441705 Neighboring gene uncharacterized LOC105373897 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:222464565-222465068 Neighboring gene ribosomal protein L23 pseudogene 5 Neighboring gene uncharacterized LOC105373898 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:222542093-222542905 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:222657489-222658022 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:222760870-222762069 Neighboring gene uncharacterized LOC105373900 Neighboring gene Sharpr-MPRA regulatory region 7272 Neighboring gene LLPH pseudogene 3 Neighboring gene heat shock protein family A (Hsp70) member 9 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

General gene information

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Clone Names

  • AC068489.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    221637529..221738686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_923942.1 RNA Sequence

  2. XR_001739235.1 RNA Sequence

  3. XR_001739234.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    222122633..222223787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072876.1 RNA Sequence

  2. XR_007072878.1 RNA Sequence

  3. XR_007072877.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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