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LOC105374102 uncharacterized LOC105374102 [ Homo sapiens (human) ]

Gene ID: 105374102, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374102
Gene description
uncharacterized LOC105374102
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374102 in Genome Data Viewer
Location:
3q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (129230742..129236011)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (131975557..131980908)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20506 Neighboring gene uncharacterized LOC105374101 Neighboring gene NFE2L2 motif-containing MPRA enhancer 136 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:128931398-128931601 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:128937355-128938310 Neighboring gene ribosomal protein S27 pseudogene 12 Neighboring gene Sharpr-MPRA regulatory region 8233 Neighboring gene NANOG hESC enhancer GRCh37_chr3:128950251-128950752 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20507 Neighboring gene CRISPRi-FlowFISH-validated H1-10 regulatory element 3 Neighboring gene COPI coat complex subunit gamma 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14719 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14720 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20508 Neighboring gene microRNA 6826 Neighboring gene 5-hydroxymethylcytosine binding, ES cell specific Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:129024401-129024985

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    129230742..129236011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924470.3 RNA Sequence

  2. XR_924472.3 RNA Sequence

  3. XR_924473.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    131975557..131980908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073819.1 RNA Sequence

  2. XR_007073820.1 RNA Sequence

  3. XR_007073821.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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