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LINC02014 long intergenic non-protein coding RNA 2014 [ Homo sapiens (human) ]

Gene ID: 105374105, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02014provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2014provided by HGNC
Primary source
HGNC:HGNC:52849
See related
Ensembl:ENSG00000248243 AllianceGenome:HGNC:52849
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02014 in Genome Data Viewer
Location:
3q22.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (130088863..130094304, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (132832728..132838154, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (129807706..129813147, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 7 subfamily E member 21 pseudogene Neighboring gene EVA1C pseudogene 6 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:129775360-129776355 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:129776356-129777350 Neighboring gene ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase like 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:129815614-129816445 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:129818109-129818938 Neighboring gene family with sequence similarity 86, member A pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20520 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20521 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14731 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14732 Neighboring gene uncharacterized LOC124909432 Neighboring gene long intergenic non-protein coding RNA 2021

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146710.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA742331, AC083906, BM767226
    Related
    ENST00000716141.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    130088863..130094304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    132832728..132838154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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