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LOC105374292 uncharacterized LOC105374292 [ Homo sapiens (human) ]

Gene ID: 105374292, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105374292
Gene description
uncharacterized LOC105374292
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374292 in Genome Data Viewer
Location:
3q29
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (194705573..194826450)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (197401912..197523165)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene TMEM44 antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21031 Neighboring gene MPRA-validated peak4980 silencer Neighboring gene uncharacterized LOC124909474 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:194395226-194396425 Neighboring gene large 60S subunit nuclear export GTPase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21032 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21033 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194407453-194407958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194407959-194408462 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21034 Neighboring gene family with sequence similarity 43 member A Neighboring gene Sharpr-MPRA regulatory region 10974 Neighboring gene long intergenic non-protein coding RNA 1968 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21035 Neighboring gene Sharpr-MPRA regulatory region 1010 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:194470908-194471615 Neighboring gene MPRA-validated peak4981 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr3:194471765-194471953 Neighboring gene Sharpr-MPRA regulatory region 2136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21036 Neighboring gene family with sequence similarity 151 member A pseudogene Neighboring gene long intergenic non-protein coding RNA 1972 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:194503362-194504561 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:194560957-194562156 Neighboring gene uncharacterized LOC107986173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194601129-194601629 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:194664161-194664661 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194665942-194666442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194666443-194666943 Neighboring gene uncharacterized LOC105374294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194707036-194707536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194708829-194709329

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    194705573..194826450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741084.2 RNA Sequence

  2. XR_002959667.2 RNA Sequence

  3. XR_002959668.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    197401912..197523165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074109.1 RNA Sequence

  2. XR_007074108.1 RNA Sequence

  3. XR_007074107.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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