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LOC105374776 uncharacterized LOC105374776 [ Homo sapiens (human) ]

Gene ID: 105374776, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374776
Gene description
uncharacterized LOC105374776
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105374776 in Genome Data Viewer
Location:
2p14
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (64777213..64794872)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (64786682..64804322)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S10 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15903 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15904 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15905 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11564 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11565 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11566 Neighboring gene uncharacterized LOC105374777 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:64994771-64995616 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:65011799-65012342 Neighboring gene RNA, 7SL, cytoplasmic 341, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:65058033-65059232 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:65065480-65066679 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15909 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15910 Neighboring gene long intergenic non-protein coding RNA 1800 Neighboring gene Sharpr-MPRA regulatory region 2197 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:65087040-65087243 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15911

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    64777213..64794872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959393.2 RNA Sequence

  2. XR_001739503.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    64786682..64804322
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072137.1 RNA Sequence

  2. XR_007072136.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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