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LOC105375070 uncharacterized LOC105375070 [ Homo sapiens (human) ]

Gene ID: 105375070, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105375070
Gene description
uncharacterized LOC105375070
See related
Ensembl:ENSG00000283573
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward bone marrow (RPKM 1.0) See more
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Genomic context

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See LOC105375070 in Genome Data Viewer
Location:
6p21.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (43797159..43904515)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (43626574..43651185)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:43674891-43675733 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24614 Neighboring gene EXOSC8 pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 12588 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43726130-43726666 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43728022-43728522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43728523-43729023 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43732509-43733010 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17241 Neighboring gene H3K27ac hESC enhancers GRCh37_chr6:43738373-43739138 and GRCh37_chr6:43739139-43739904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43739905-43740670 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43740671-43741436 Neighboring gene Sharpr-MPRA regulatory region 8365 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43766999-43767583 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24618 Neighboring gene vascular endothelial growth factor A Neighboring gene Sharpr-MPRA regulatory region 5169 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24619 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24620 Neighboring gene uncharacterized LOC105375069 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43818433-43819079 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43819727-43820373 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43819080-43819726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43825966-43826637 Neighboring gene long intergenic non-protein coding RNA 2537 Neighboring gene uncharacterized LOC105375068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43845203-43845710 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43845711-43846218 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24621 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43854868-43855768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43857224-43858185 Neighboring gene long intergenic non-protein coding RNA 1512 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43878694-43879258 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43879259-43879821 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43880895-43881684 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24622 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43893291-43894024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43911713-43912238 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43918399-43919384 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43932755-43933254 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24623 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43952691-43953286 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:43957693-43958202 Neighboring gene uncharacterized LOC124901321 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43961654-43962154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24624 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17244 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:43972319-43972950 Neighboring gene long intergenic non-protein coding RNA 3040 Neighboring gene stem cell inhibitory RNA transcript

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    43797159..43904515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059588.1 RNA Sequence

    Related
    ENST00000719551.1

  2. XR_007059589.1 RNA Sequence

  3. XR_926833.3 RNA Sequence

    Related
    ENST00000719556.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    43626574..43651185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076795.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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