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LOC105375433 uncharacterized LOC105375433 [ Homo sapiens (human) ]

Gene ID: 105375433, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105375433
Gene description
uncharacterized LOC105375433
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 1.1), spleen (RPKM 0.8) and 7 other tissues See more
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Genomic context

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See LOC105375433 in Genome Data Viewer
Location:
7q22.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (102405778..102421110, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (103723445..103738753, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene speedy/RINGO cell cycle regulator family member E6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26426 Neighboring gene LOC100289561-PRKRIP1 readthrough Neighboring gene uncharacterized LOC100289561 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26427 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18503 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:102036787-102037328 Neighboring gene PRKR interacting protein 1 Neighboring gene microRNA 548o Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26429 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26431 Neighboring gene NANOG hESC enhancer GRCh37_chr7:102061269-102061799 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:102066011-102066914 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26433 Neighboring gene Sharpr-MPRA regulatory region 9959 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18504 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18505 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26434 Neighboring gene ORAI calcium release-activated calcium modulator 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:102086939-102087486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26435 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:102095159-102095659 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:102105053-102105702 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:102105832-102106358 Neighboring gene alkB homolog 4, lysine demethylase Neighboring gene microRNA 5090 Neighboring gene leucine rich repeats and WD repeat domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    102405778..102421110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007060459.1 RNA Sequence

  2. XR_007060460.1 RNA Sequence

  3. XR_001744971.2 RNA Sequence

  4. XR_927823.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    103723445..103738753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_008487775.1 RNA Sequence

  2. XR_008487776.1 RNA Sequence

  3. XR_007077778.1 RNA Sequence

  4. XR_007077777.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials