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LOC105375825 uncharacterized LOC105375825 [ Homo sapiens (human) ]

Gene ID: 105375825, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105375825
Gene description
uncharacterized LOC105375825
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105375825 in Genome Data Viewer
Location:
8q11.21
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (48780608..48828577)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (49158459..49207250)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929268 Neighboring gene long intergenic non-protein coding RNA 2847 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49536704-49537208 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:49539781-49540980 Neighboring gene long intergenic non-protein coding RNA 3054 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:49549377-49550576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49558419-49558919 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49608983-49609482 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49647232-49647906 Neighboring gene calaxin Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:49700925-49702124 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:49711615-49712177 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49731577-49732548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49770863-49771363 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:49777111-49777698 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27334 Neighboring gene uncharacterized LOC107986942 Neighboring gene snail family transcriptional repressor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    48780608..48828577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745894.2 RNA Sequence

  2. XR_928859.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    49158459..49207250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078978.1 RNA Sequence

  2. XR_007078979.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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