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LOC105375844 uncharacterized LOC105375844 [ Homo sapiens (human) ]

Gene ID: 105375844, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105375844
Gene description
uncharacterized LOC105375844
See related
Ensembl:ENSG00000253857
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105375844 in Genome Data Viewer
Location:
8q12.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (55161455..55164451)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (55539056..55542052)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (56074015..56077011)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene RP1 axonemal microtubule associated Neighboring gene uncharacterized LOC105375842 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:55787756-55788338 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:55795336-55796119 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:55809304-55810503 Neighboring gene MPRA-validated peak7023 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:55923506-55924006 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:55962859-55963358 Neighboring gene uncharacterized LOC107986886 Neighboring gene uncharacterized LOC107986887 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:55991285-55992111 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:56014243-56014910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56015579-56016244 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:56040789-56041681 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56054535-56055034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56054033-56054534 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:56082878-56083063 Neighboring gene XK related 4 Neighboring gene Sharpr-MPRA regulatory region 131 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:56170973-56172172 Neighboring gene NANOG hESC enhancer GRCh37_chr8:56226088-56226589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56276417-56277111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56277806-56278500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56280453-56280954 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:56285036-56285662 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:56285663-56286288 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:56366282-56366665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27373 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27374 Neighboring gene SET binding factor 1 pseudogene 1 Neighboring gene XKR4 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188097.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022679
    Related
    ENST00000522559.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    55161455..55164451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    55539056..55542052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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