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LOC105375879 uncharacterized LOC105375879 [ Homo sapiens (human) ]

Gene ID: 105375879, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105375879
Gene description
uncharacterized LOC105375879
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in bone marrow (RPKM 3.3), testis (RPKM 0.5) and 7 other tissues See more
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Genomic context

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See LOC105375879 in Genome Data Viewer
Location:
8q12.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (64798781..64817432)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (65224298..65242957)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27455 Neighboring gene BHLHE22 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65499285-65499928 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:65499929-65500572 Neighboring gene NANOG hESC enhancer GRCh37_chr8:65522320-65522853 Neighboring gene basic helix-loop-helix family member e22 Neighboring gene cytochrome P450 family 7 subfamily B member 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27457 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19243 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19244 Neighboring gene uncharacterized LOC105375878 Neighboring gene NANOG hESC enhancer GRCh37_chr8:65843197-65843698 Neighboring gene uncharacterized LOC105375880 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:66032098-66033297 Neighboring gene NANOG hESC enhancer GRCh37_chr8:66042550-66043074 Neighboring gene NANOG hESC enhancer GRCh37_chr8:66044843-66045344 Neighboring gene ribosomal protein L31 pseudogene 41

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    64798781..64817432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_928992.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    65224298..65242957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079090.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials