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LOC105376105 uncharacterized LOC105376105 [ Homo sapiens (human) ]

Gene ID: 105376105, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376105
Gene description
uncharacterized LOC105376105
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376105 in Genome Data Viewer
Location:
9q21.31
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (81885998..81977089, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (94035624..94126732, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (84500913..84592004, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr9:84349086-84349247 Neighboring gene TLE1 divergent transcript Neighboring gene RNA, U6 small nuclear 1035, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:84375421-84375922 Neighboring gene NANOG hESC enhancer GRCh37_chr9:84398794-84399306 Neighboring gene NANOG hESC enhancer GRCh37_chr9:84434914-84435503 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:84458661-84459441 Neighboring gene small nucleolar RNA SNORD95 Neighboring gene uncharacterized LOC124902187 Neighboring gene RNA, 5S ribosomal pseudogene 287 Neighboring gene SPATA31 subfamily D member 5, pseudogene Neighboring gene SPATA31 subfamily D member 4 Neighboring gene SPATA31 subfamily D member 3 Neighboring gene uncharacterized LOC105376107 Neighboring gene SPATA31 subfamily D member 2, pseudogene Neighboring gene SPATA31 subfamily D member 1 Neighboring gene SPATA31 subfamily B member 1, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188610.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158154, AL355985

  2. NR_188611.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158154, AL355985

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    81885998..81977089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    94035624..94126732 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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