U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02643 long intergenic non-protein coding RNA 2643 [ Homo sapiens (human) ]

Gene ID: 105376444, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
LINC02643provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2643provided by HGNC
Primary source
HGNC:HGNC:54126
See related
Ensembl:ENSG00000230109 AllianceGenome:HGNC:54126
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC02643 in Genome Data Viewer
Location:
10p12.31
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (21340233..21372950, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (21359170..21391908, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (21629162..21661879, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene nebulette Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3120 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21570748-21571426 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:21571427-21572103 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21574449-21575208 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21575969-21576728 Neighboring gene leucine zipper protein 4 pseudogene 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:21581467-21582666 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21585759-21586559 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3121 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:21598312-21598930 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:21625535-21626086 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:21645067-21645566 Neighboring gene RNA, U6 small nuclear 15, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:21651599-21652196 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:21652197-21652792 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:21661731-21662232 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:21674728-21675658 Neighboring gene glyoxalase domain containing 4 pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:21692015-21692554 Neighboring gene uncharacterized LOC124902390 Neighboring gene MRM3 pseudogene 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_155751.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BQ082191
    Related
    ENST00000433460.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    21340233..21372950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    21359170..21391908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials