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LOC105377422 uncharacterized LOC105377422 [ Homo sapiens (human) ]

Gene ID: 105377422, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377422
Gene description
uncharacterized LOC105377422
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377422 in Genome Data Viewer
Location:
4q28.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (131104704..131136251, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (134408622..134440134, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_74530 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_74536 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 56 Neighboring gene piggyBac transposable element derived 4 pseudogene 4 Neighboring gene Sharpr-MPRA regulatory region 6093 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:131553588-131554787 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:131567488-131567988 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:131688324-131689108 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:131934342-131934873 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:132130190-132130788 Neighboring gene RNA, U6 small nuclear 224, pseudogene Neighboring gene uncharacterized LOC105377423

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    131104704..131136251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939196.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    134408622..134440134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074289.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials