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LOC105377428 uncharacterized LOC105377428 [ Homo sapiens (human) ]

Gene ID: 105377428, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105377428
Gene description
uncharacterized LOC105377428
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377428 in Genome Data Viewer
Location:
4q28.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (132026002..132060490, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (135349802..135384261, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900177 Neighboring gene uncharacterized LOC105377425 Neighboring gene small nucleolar RNA host gene 27 Neighboring gene ribosomal protein L7a pseudogene 28 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:133042782-133042957 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:133045368-133046113 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:133046114-133046858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:133090465-133090966 Neighboring gene elongation factor for RNA polymerase II 2 pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:133416211-133416731 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:133416732-133417251 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:133440023-133441222 Neighboring gene long intergenic non-protein coding RNA 1256 Neighboring gene alanyl-tRNA synthetase 1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    132026002..132060490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939203.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    135349802..135384261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074297.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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