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LOC105377609 uncharacterized LOC105377609 [ Homo sapiens (human) ]

Gene ID: 105377609, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105377609
Gene description
uncharacterized LOC105377609
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in kidney (RPKM 1.1) and testis (RPKM 0.3) See more
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Genomic context

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See LOC105377609 in Genome Data Viewer
Location:
4q35.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (188428599..188466878, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (191772397..191813751, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377608 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:189320726-189321477 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189326005-189327204 Neighboring gene interactor of little elongation complex ELL subunit 2 pseudogene 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189365717-189366916 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189369247-189370446 Neighboring gene long intergenic non-protein coding RNA 1060 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:189406194-189407393 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:189487077-189487281 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:189579916-189580416 Neighboring gene RNA, U7 small nuclear 192 pseudogene Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    188428599..188466878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741960.2 RNA Sequence

  2. XR_939621.3 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187545.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    83766..125456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001756258.2 RNA Sequence

  2. XR_951673.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    191772397..191813751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075281.1 RNA Sequence

  2. XR_007075280.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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