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LOC105377740 uncharacterized LOC105377740 [ Homo sapiens (human) ]

Gene ID: 105377740, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105377740
Gene description
uncharacterized LOC105377740
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377740 in Genome Data Viewer
Location:
5q35.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (174615581..174621080)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (175156541..175163796)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1411 Neighboring gene uncharacterized LOC105377739 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:173958925-173960124 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:173999018-174000217 Neighboring gene SUMO2 pseudogene 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174035513-174036138 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:174056950-174057177 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174099129-174099629 Neighboring gene NANOG hESC enhancer GRCh37_chr5:174108078-174108601 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:174119538-174120038 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:174120039-174120539 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174135192-174135692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174135693-174136193 Neighboring gene NANOG hESC enhancer GRCh37_chr5:174147650-174148179 Neighboring gene msh homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    174615581..174621080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007059140.1 RNA Sequence

  2. XR_941262.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    175156541..175163796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076154.1 RNA Sequence

  2. XR_007076153.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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