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LOC105377909 uncharacterized LOC105377909 [ Homo sapiens (human) ]

Gene ID: 105377909, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105377909
Gene description
uncharacterized LOC105377909
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105377909 in Genome Data Viewer
Location:
6q16.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (97456571..97456902, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (98630502..98630833, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17409 Neighboring gene MPRA-validated peak5969 silencer Neighboring gene MPRA-validated peak5970 silencer Neighboring gene RNA, 7SL, cytoplasmic 509, pseudogene Neighboring gene kelch like family member 32 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:97439657-97440156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24847 Neighboring gene Sharpr-MPRA regulatory region 4079 Neighboring gene VISTA enhancer hs676 Neighboring gene MPRA-validated peak5971 silencer Neighboring gene MMS22 like, DNA repair protein Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24848 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24849 Neighboring gene uncharacterized LOC101927314 Neighboring gene VISTA enhancer hs978 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:97869967-97870670 Neighboring gene VISTA enhancer hs1564 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:97972665-97973270 Neighboring gene uncharacterized LOC107986627 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98039517-98040026 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98040027-98040534 Neighboring gene VISTA enhancer hs1035 Neighboring gene VISTA enhancer hs282 Neighboring gene VISTA enhancer hs1220 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:98227185-98227961 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:98228738-98229514 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:98229515-98230289 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98232017-98232808 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98232809-98233600 Neighboring gene NANOG hESC enhancer GRCh37_chr6:98260745-98261246 Neighboring gene VISTA enhancer hs567 Neighboring gene microRNA 2113

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    97456571..97456902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_942808.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    98630502..98630833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076991.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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