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LOC105378135 uncharacterized LOC105378135 [ Homo sapiens (human) ]

Gene ID: 105378135, updated on 10-Dec-2024

Summary

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Gene symbol
LOC105378135
Gene description
uncharacterized LOC105378135
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378135 in Genome Data Viewer
Location:
6q27
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (168045194..168046162, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (169386116..169387084, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene KIF25 antisense RNA 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:168407804-168409003 Neighboring gene kinesin family member 25 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168412930-168413846 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:168426039-168426217 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:168430121-168430302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168449097-168449596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168459591-168460092 Neighboring gene FERM domain containing 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168478883-168479604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168482533-168483533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168483534-168484533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168499911-168500412 Neighboring gene uncharacterized LOC107986548

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    168045194..168046162 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_943283.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    169386116..169387084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077344.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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