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LOC105378520 uncharacterized LOC105378520 [ Homo sapiens (human) ]

Gene ID: 105378520, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105378520
Gene description
uncharacterized LOC105378520
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in stomach (RPKM 1.7), lung (RPKM 0.3) and 4 other tissues See more
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Genomic context

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See LOC105378520 in Genome Data Viewer
Location:
10q26.12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (120984962..120997574, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (121881145..121893757, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2930 Neighboring gene WDR11 divergent transcript Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:122558239-122558907 Neighboring gene H3K27ac hESC enhancers GRCh37_chr10:122610516-122611060 and GRCh37_chr10:122611061-122611604 Neighboring gene WD repeat domain 11 Neighboring gene uncharacterized LOC105378519 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:122669667-122670866 Neighboring gene Sharpr-MPRA regulatory region 5528 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_10489 Neighboring gene uncharacterized LOC105378521 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:122784424-122784924 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:122784925-122785425 Neighboring gene uncharacterized LOC124902516

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    120984962..120997574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_946375.3 RNA Sequence

  2. XR_946373.3 RNA Sequence

  3. XR_007062316.1 RNA Sequence

  4. XR_007062315.1 RNA Sequence

  5. XR_946374.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    121881145..121893757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081119.1 RNA Sequence

  2. XR_007081117.1 RNA Sequence

  3. XR_007081121.1 RNA Sequence

  4. XR_007081120.1 RNA Sequence

  5. XR_007081118.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials