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LOC105379443 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene [ Homo sapiens (human) ]

Gene ID: 105379443, updated on 10-Dec-2024

Summary

Gene symbol
LOC105379443
Gene description
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene
See related
Ensembl:ENSG00000290579
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 4.3), testis (RPKM 1.0) and 8 other tissues See more
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Genomic context

See LOC105379443 in Genome Data Viewer
Location:
9q21.11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (65143058..65185164)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (42721591..42784659, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 30B pseudogene Neighboring gene vomeronasal 1 receptor 49 pseudogene Neighboring gene RNA, U6 small nuclear 1293, pseudogene Neighboring gene uncharacterized LOC102724507 Neighboring gene uncharacterized LOC112268045 Neighboring gene BMS1 pseudogene 12

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160670.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL512605, FO082814
    Related
    ENST00000718618.1
  2. NR_160671.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO082814
    Related
    ENST00000718627.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    65143058..65185164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    42721591..42784659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)