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LOC105676391 uncharacterized LOC105676391 [ Linepithema humile (Argentine ant) ]

Gene ID: 105676391, updated on 1-Oct-2024

Summary

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Gene symbol
LOC105676391
Gene description
uncharacterized LOC105676391
See related
EnsemblRapid:LOC105676391
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Linepithema humile
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dolichoderinae; Linepithema
Also known as
vkr
Orthologs
honey bee all
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Genomic context

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See LOC105676391 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current Lhum_UNIL_v1.0 (GCF_040581485.1) 3 NC_090130.1 (3245621..3274743, complement)
100 previous assembly Lhum_UMD_V04 (GCF_000217595.1) Unplaced Scaffold NW_012160777.1 (2135732..2233336, complement)

Chromosome 3 - NC_090130.1Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes 5 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene putative gustatory receptor 28a Neighboring gene small lysine-rich protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The venus kinase receptor (VKR) family: structure and evolution. Vanderstraete M, et al. BMC Genomics, 2013 May 30. PMID 23721482, Free PMC Article
  2. Schistosoma mansoni: structural and biochemical characterization of two distinct Venus Kinase Receptors. Gouignard N, et al. Exp Parasitol, 2012 Sep. PMID 21616067
  3. An unusual receptor tyrosine kinase of Schistosoma mansoni contains a Venus Flytrap module. Vicogne J, et al. Mol Biochem Parasitol, 2003 Jan. PMID 12554084
  4. A new family of receptor tyrosine kinases with a venus flytrap binding domain in insects and other invertebrates activated by aminoacids. Ahier A, et al. PLoS One, 2009 May 21. PMID 19461966, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables G protein-coupled GABA receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane receptor protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamma-aminobutyric acid signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of G protein-coupled receptor heterodimeric complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized LOC105676391
Names
venus kinase receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001309442.1 → NP_001296371.1  uncharacterized LOC105676391

    See identical proteins and their annotated locations for NP_001296371.1

    Status: PROVISIONAL

    Source sequence(s)
    BK008753
    UniProtKB/TrEMBL
    S6G3A4
    Conserved Domains (4) summary
    cd06366
    Location:338 → 731
    PBP1_GABAb_receptor; Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)
    smart00221
    Location:846 → 1075
    STYKc; Protein kinase; unclassified specificity
    pfam01094
    Location:357 → 713
    ANF_receptor; Receptor family ligand binding region
    cl21453
    Location:850 → 1076
    PKc_like; Protein Kinases, catalytic domain

RefSeqs of Annotated Genomes: GCF_040581485.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lhum_UNIL_v1.0 Primary Assembly

Genomic

  1. NC_090130.1 Reference Lhum_UNIL_v1.0 Primary Assembly

    Range
    3245621..3274743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012374213.2 → XP_012229636.1  uncharacterized LOC105676391 isoform X1

    See identical proteins and their annotated locations for XP_012229636.1

    Related
    XP_012229636.1
    Conserved Domains (4) summary
    cd06366
    Location:401 → 794
    PBP1_GABAb_receptor; Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)
    smart00221
    Location:909 → 1176
    STYKc; Protein kinase; unclassified specificity
    cd00192
    Location:913 → 1177
    PTKc; Catalytic domain of Protein Tyrosine Kinases
    pfam01094
    Location:420 → 776
    ANF_receptor; Receptor family ligand binding region
Nucleotide Protein
Heading Accession and Version

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