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Hsc70-4 heat shock protein cognate 4 [ Linepithema humile (Argentine ant) ]

Gene ID: 105679998, updated on 3-Oct-2024

Summary

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Gene symbol
Hsc70-4
Gene description
heat shock protein cognate 4
See related
EnsemblRapid:LOC105679998
Gene type
protein coding
RefSeq status
MODEL
Organism
Linepithema humile
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dolichoderinae; Linepithema
Orthologs
honey bee all
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Genomic context

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See Hsc70-4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current Lhum_UNIL_v1.0 (GCF_040581485.1) 2 NC_090129.1 (9337313..9340408, complement)
100 previous assembly Lhum_UMD_V04 (GCF_000217595.1) Unplaced Scaffold NW_012160344.1 (533838..537205)

Chromosome 2 - NC_090129.1Genomic Context describing neighboring genes Neighboring gene protein toll-like Neighboring gene lysosomal enzyme receptor protein Neighboring gene E3 ubiquitin-protein ligase RNF10 Neighboring gene malectin-A Neighboring gene fatty acid-binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Smith CD, et al. Proc Natl Acad Sci U S A, 2011 Apr 5. PMID 21282631, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat shock 70 kDa protein cognate 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040581485.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lhum_UNIL_v1.0 Primary Assembly

Genomic

  1. NC_090129.1 Reference Lhum_UNIL_v1.0 Primary Assembly

    Range
    9337313..9340408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012380379.2 → XP_012235802.1  heat shock 70 kDa protein cognate 4

    Related
    XP_012235802.1
    Conserved Domains (2) summary
    cd10233
    Location:6 → 381
    HSPA1-2_6-8-like_NBD; Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins
    PTZ00009
    Location:1 → 612
    PTZ00009; heat shock 70 kDa protein; Provisional
Nucleotide Protein
Heading Accession and Version

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