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Prp8 pre-mRNA processing factor 8 [ Linepithema humile (Argentine ant) ]

Gene ID: 105680110, updated on 10-Oct-2024

Summary

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Gene symbol
Prp8
Gene description
pre-mRNA processing factor 8
See related
EnsemblRapid:LOC105680110
Gene type
protein coding
RefSeq status
MODEL
Organism
Linepithema humile
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Dolichoderinae; Linepithema
Orthologs
fruit fly honey bee all
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Genomic context

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See Prp8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current Lhum_UNIL_v1.0 (GCF_040581485.1) 1 NC_090128.1 (8709826..8718710, complement)
100 previous assembly Lhum_UMD_V04 (GCF_000217595.1) Unplaced Scaffold NW_012160364.1 (18107..26978, complement)

Chromosome 1 - NC_090128.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105680100 Neighboring gene SAYSVFN motif domain containing 1 Neighboring gene nucleoside diphosphate kinase Neighboring gene Inositol phosphatase interacting protein Neighboring gene bridge-like lipid transfer protein family member hobbit Neighboring gene short stature homeobox protein 2-like Neighboring gene transportin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Smith CD, et al. Proc Natl Acad Sci U S A, 2011 Apr 5. PMID 21282631, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U1 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U5 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA intronic binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing-splicing factor 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040581485.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lhum_UNIL_v1.0 Primary Assembly

Genomic

  1. NC_090128.1 Reference Lhum_UNIL_v1.0 Primary Assembly

    Range
    8709826..8718710 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012380561.2 → XP_012235984.1  pre-mRNA-processing-splicing factor 8

    Related
    XP_012235984.1
    Conserved Domains (8) summary
    cd08056
    Location:2104 → 2354
    MPN_PRP8; Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8
    COG5178
    Location:51 → 2372
    PRP8; U5 snRNP spliceosome subunit [RNA processing and modification]
    cd13838
    Location:1803 → 2053
    RNase_H_like_Prp8_IV; Ribonuclease-like Prp8 domain IV core
    pfam08082
    Location:96 → 246
    PRO8NT; PRO8NT (NUC069), PrP8 N-terminal domain
    pfam08083
    Location:433 → 833
    PROCN; PROCN (NUC071) domain
    pfam10596
    Location:1479 → 1637
    U6-snRNA_bdg; U6-snRNA interacting domain of PrP8
    pfam10597
    Location:1247 → 1379
    U5_2-snRNA_bdg; U5-snRNA binding site 2 of PrP8
    pfam10598
    Location:1023 → 1114
    RRM_4; RNA recognition motif of the spliceosomal PrP8
Nucleotide Protein
Heading Accession and Version

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