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LOC105695407 zinc finger protein 665 [ Orussus abietinus ]

Gene ID: 105695407, updated on 22-Oct-2023

Summary

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Gene symbol
LOC105695407
Gene description
zinc finger protein 665
See related
EnsemblRapid:LOC105695407
Gene type
protein coding
RefSeq status
MODEL
Organism
Orussus abietinus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Orussoidea; Orussidae; Orussus
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Genomic context

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See LOC105695407 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Oabi_2.0 (GCF_000612105.2) Unplaced Scaffold NW_019396019.1 (456996..460799)
100 previous assembly Oabi_1.0 (GCF_000612105.1) Unplaced Scaffold NW_012191667.1 (458383..462186)

NW_019396019.1Genomic Context describing neighboring genes Neighboring gene Hepatocyte nuclear factor 4 Neighboring gene intraflagellar transport protein 74 homolog Neighboring gene DNA replication complex GINS protein PSF3 Neighboring gene bicoid stability factor Neighboring gene widerborst

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenomics resolves the timing and pattern of insect evolution. Misof B, et al. Science, 2014 Nov 7. PMID 25378627
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 665

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Orussus abietinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oabi_2.0

Genomic

  1. NW_019396019.1 Reference Oabi_2.0

    Range
    456996..460799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012416942.1 → XP_012272365.1  zinc finger protein 665 isoform X1

    Related
    XP_012272365.1, XM_012416942.1
    Conserved Domains (4) summary
    smart00868
    Location:181 → 249
    zf-AD; Zinc-finger associated domain (zf-AD)
    COG5048
    Location:570 → 974
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:845 → 865
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:888 → 910
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012416944.1 → XP_012272367.1  zinc finger protein 665 isoform X3

    Related
    XP_012272367.1, XM_012416944.1
    Conserved Domains (4) summary
    smart00868
    Location:181 → 249
    zf-AD; Zinc-finger associated domain (zf-AD)
    COG5048
    Location:522 → 926
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:797 → 817
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:840 → 862
    zf-H2C2_2; Zinc-finger double domain

  3. XM_012416943.1 → XP_012272366.1  zinc finger protein 665 isoform X2

    Related
    XP_012272366.1, XM_012416943.1
    Conserved Domains (4) summary
    smart00868
    Location:152 → 220
    zf-AD; Zinc-finger associated domain (zf-AD)
    COG5048
    Location:541 → 945
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:816 → 836
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:859 → 881
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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