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VPS18 VPS18 core subunit of CORVET and HOPS complexes [ Propithecus coquereli (Coquerel's sifaka) ]

Gene ID: 105814524, updated on 13-Mar-2024

Summary

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Gene symbol
VPS18
Gene description
VPS18 core subunit of CORVET and HOPS complexes
See related
Ensembl:ENSPCOG00000023973
Gene type
protein coding
RefSeq status
MODEL
Organism
Propithecus coquereli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
Orthologs
human mouse all
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Genomic context

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See VPS18 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012148618.1 (12066636..12075264)

NW_012148618.1Genomic Context describing neighboring genes Neighboring gene serine peptidase inhibitor, Kunitz type 1 Neighboring gene ras homolog family member V Neighboring gene delta like canonical Notch ligand 4 Neighboring gene ChaC glutathione specific gamma-glutamylcyclotransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_012148618.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lysosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 18 homolog
Names
VPS18, CORVET/HOPS core subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Pcoq_1.0 Primary Assembly

Genomic

  1. NW_012148618.1 Reference Pcoq_1.0 Primary Assembly

    Range
    12066636..12075264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012649530.1 → XP_012504984.1  vacuolar protein sorting-associated protein 18 homolog

    UniProtKB/TrEMBL
    A0A2K6GBM6
    Related
    ENSPCOP00000023660.1, ENSPCOT00000034340.1
    Conserved Domains (3) summary
    smart00299
    Location:644 → 768
    CLH; Clathrin heavy chain repeat homology
    pfam00637
    Location:638 → 769
    Clathrin; Region in Clathrin and VPS
    pfam05131
    Location:291 → 434
    Pep3_Vps18; Pep3/Vps18/deep orange family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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