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LOC105940388 cyclin-dependent kinase 5 activator 1 [ Fundulus heteroclitus (mummichog) ]

Gene ID: 105940388, updated on 20-Aug-2024

Summary

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Gene symbol
LOC105940388
Gene description
cyclin-dependent kinase 5 activator 1
See related
EnsemblRapid:ENSFHEG00000016446
Gene type
protein coding
RefSeq status
MODEL
Organism
Fundulus heteroclitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
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Genomic context

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See LOC105940388 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 16 NC_046376.1 (33509787..33518286, complement)
101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012224511.1 (300007..310064)

Chromosome 16 - NC_046376.1Genomic Context describing neighboring genes Neighboring gene vesicle-fusing ATPase-like Neighboring gene N-ethylmaleimide-sensitive factor a Neighboring gene 26S proteasome non-ATPase regulatory subunit 11A Neighboring gene RPA interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of protein kinase 5 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-dependent kinase 5 activator 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU-UCD_Fhet_4.1 Primary Assembly

Genomic

  1. NC_046376.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

    Range
    33509787..33518286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012882905.3 → XP_012738359.2  cyclin-dependent kinase 5 activator 1

    UniProtKB/TrEMBL
    A0A147B0C3
    Related
    ENSFHEP00000014863.2, ENSFHET00000032963.2
    Conserved Domains (1) summary
    pfam03261
    Location:20 → 314
    CDK5_activator; Cyclin-dependent kinase 5 activator protein
Nucleotide Protein
Heading Accession and Version

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