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LOC106171159 dynein assembly factor 4, axonemal [ Lingula anatina ]

Gene ID: 106171159, updated on 21-Dec-2023

Summary

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Gene symbol
LOC106171159
Gene description
dynein assembly factor 4, axonemal
See related
EnsemblRapid:LOC106171159
Gene type
protein coding
RefSeq status
MODEL
Organism
Lingula anatina
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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Genomic context

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See LOC106171159 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775802.1 (688932..696814)
100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013579555.1 (688931..696814)

NW_019775802.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106171195 Neighboring gene gamma-butyrobetaine dioxygenase Neighboring gene stomatin-like protein 2, mitochondrial Neighboring gene probable ATP-dependent RNA helicase YTHDC2 Neighboring gene low affinity immunoglobulin epsilon Fc receptor Neighboring gene CD209 antigen-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium movement IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inner dynein arm assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in outer dynein arm assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dynein assembly factor 4, axonemal
Names
dyslexia susceptibility 1 candidate gene 1 protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LinAna2.0 Primary Assembly

Genomic

  1. NW_019775802.1 Reference LinAna2.0 Primary Assembly

    Range
    688932..696814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013551329.2 → XP_013406783.1  dynein assembly factor 4, axonemal

    UniProtKB/TrEMBL
    A0A1S3J8Z5
    Related
    XP_013406783.1, XM_013551329.2
    Conserved Domains (4) summary
    cd06469
    Location:10 → 86
    p23_DYX1C1_like; p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD ...
    sd00006
    Location:283 → 311
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:360 → 392
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:282 → 346
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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