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RNU4ATAC10P RNA, U4atac small nuclear 10, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479542, updated on 17-Sep-2024

Summary

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Official Symbol
RNU4ATAC10Pprovided by HGNC
Official Full Name
RNA, U4atac small nuclear 10, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:46896
See related
Ensembl:ENSG00000252776 AllianceGenome:HGNC:46896
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU4ATAC10P in Genome Data Viewer
Location:
11q24.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (122449210..122449331)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (122478617..122478738)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (122319918..122320039)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene mir-100-let-7a-2-mir-125b-1 cluster host gene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:122050835-122052034 Neighboring gene microRNA 10526 Neighboring gene microRNA 100 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:122067486-122068685 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5666 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:122100557-122101387 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:122244306-122244840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4007 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:122292931-122294130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:122312133-122312797 Neighboring gene RNA, U4atac small nuclear 5, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4008 Neighboring gene tRNA-Lys (anticodon TTT) 2-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044341.1 

    Range
    101..222
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    122449210..122449331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    122478617..122478738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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