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RNU6-590P RNA, U6 small nuclear 590, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480593, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-590Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 590, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47553
See related
Ensembl:ENSG00000201909 AllianceGenome:HGNC:47553
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-590P in Genome Data Viewer
Location:
12p13.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (13459670..13459776, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (13334093..13334199, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (13612604..13612710, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:13528282-13529481 Neighboring gene long intergenic non-protein coding RNA 1559 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:13591195-13591716 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:13591717-13592238 Neighboring gene RNA, 5S ribosomal pseudogene 353 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6035 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:13651563-13652064 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:13652065-13652564 Neighboring gene MPRA-validated peak1577 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:13679281-13680273 Neighboring gene Sharpr-MPRA regulatory region 1907 Neighboring gene uncharacterized LOC105369668 Neighboring gene glutamate ionotropic receptor NMDA type subunit 2B Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr12:13748291-13749049 Neighboring gene RN7SK pseudogene 162

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044559.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    13459670..13459776 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    13334093..13334199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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