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RNU6-1047P RNA, U6 small nuclear 1047, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481511, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-1047Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1047, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48010
See related
Ensembl:ENSG00000201288 AllianceGenome:HGNC:48010
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-1047P in Genome Data Viewer
Location:
3q21.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (127240968..127241074, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (129973442..129973548, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (126959811..126959917, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126915318-126916262 Neighboring gene PRR23 family member E Neighboring gene ReSE screen-validated silencer GRCh37_chr3:126926904-126927070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20452 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20453 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20454 Neighboring gene PRR23 family member E2, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126983520-126984020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126984021-126984521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126992945-126993459 Neighboring gene uncharacterized LOC124906281 Neighboring gene NANOG hESC enhancer GRCh37_chr3:126995796-126996297 Neighboring gene proline rich 20G

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043742.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    127240968..127241074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    129973442..129973548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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