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VTA1P1 vesicle trafficking 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 106481708, updated on 17-Sep-2024

Summary

Official Symbol
VTA1P1provided by HGNC
Official Full Name
vesicle trafficking 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:50483
See related
Ensembl:ENSG00000224999 AllianceGenome:HGNC:50483
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See VTA1P1 in Genome Data Viewer
Location:
6q27
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (169296471..169297959, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (170649145..170650633, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (169696566..169698054, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169576328-169576828 Neighboring gene long intergenic non-protein coding RNA 2544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169585397-169585896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169587933-169588434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169588435-169588934 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17794 Neighboring gene THBS2 antisense RNA 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:169624128-169625327 Neighboring gene uncharacterized LOC124901470 Neighboring gene MPRA-validated peak6323 silencer Neighboring gene thrombospondin 2 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:169639978-169641177 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:169651477-169651990 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:169652503-169653015 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:169653016-169653527 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169663055-169663557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169666201-169666700 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:169669953-169670713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169684859-169685360 Neighboring gene MPRA-validated peak6324 silencer Neighboring gene uncharacterized LOC105378148 Neighboring gene uncharacterized LOC124901472

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043284.1 

    Range
    101..1589
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    169296471..169297959 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    170649145..170650633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)