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LOC106965289 ATP-binding cassette sub-family B member 9-like [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106965289, updated on 2-Nov-2023

Summary

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Gene symbol
LOC106965289
Gene description
ATP-binding cassette sub-family B member 9-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC106965289 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015114413.1 (489..6433)

NW_015114413.1Genomic Context describing neighboring genes Neighboring gene VPS37B subunit of ESCRT-I a Neighboring gene protein phosphatase 3, catalytic subunit, gamma isozyme, a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015114413.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type oligopeptide transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family B member 9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015114413.1 Reference P_latipinna-1.0

    Range
    489..6433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015061294.1 → XP_014916780.1  ATP-binding cassette sub-family B member 9-like isoform X1

    UniProtKB/TrEMBL
    A0A3B3U4H1
    Conserved Domains (3) summary
    cd03249
    Location:279 → 516
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    COG5265
    Location:35 → 515
    ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
    pfam00664
    Location:7 → 228
    ABC_membrane; ABC transporter transmembrane region

  2. XM_015061295.1 → XP_014916781.1  ATP-binding cassette sub-family B member 9-like isoform X2

    UniProtKB/TrEMBL
    A0A3B3U4H1
    Conserved Domains (3) summary
    cd03249
    Location:232 → 469
    ABC_MTABC3_MDL1_MDL2; ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins
    COG1126
    Location:231 → 451
    GlnQ; ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
    cl00549
    Location:5 → 181
    ABC_membrane; ABC transporter transmembrane region
Nucleotide Protein
Heading Accession and Version

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