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HPS5 HPS5 biogenesis of lysosomal organelles complex 2 subunit 2 [ Gallus gallus (chicken) ]

Gene ID: 107048993, updated on 17-Aug-2024

Summary

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Official Symbol
HPS5provided by CGNC
Official Full Name
HPS5 biogenesis of lysosomal organelles complex 2 subunit 2provided by CGNC
Primary source
CGNC:80608
See related
Ensembl:ENSGALG00010024454
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See HPS5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (12101493..12121519, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (12070121..12090119, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene tryptophan hydroxylase 1 Neighboring gene uncharacterized LOC107053391 Neighboring gene serum amyloid A like 1 Neighboring gene serum amyloid A Neighboring gene uncharacterized LOC121111035 Neighboring gene general transcription factor IIH subunit 1 Neighboring gene lactate dehydrogenase A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in developmental pigmentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Hermansky-Pudlak syndrome 5 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12101493..12121519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_421011.8 → XP_421011.6  Hermansky-Pudlak syndrome 5 protein isoform X1

    UniProtKB/TrEMBL
    A0A8V1A1Q1
    Related
    ENSGALP00010036442.1, ENSGALT00010059661.1
    Conserved Domains (1) summary
    sd00039
    Location:41 → 76
    7WD40; WD40 repeat [structural motif]

  2. XM_015286661.4 → XP_015142147.2  Hermansky-Pudlak syndrome 5 protein isoform X2

    Conserved Domains (1) summary
    sd00039
    Location:41 → 76
    7WD40; WD40 repeat [structural motif]

RNA

  1. XR_005860142.2 RNA Sequence

  2. XR_005860141.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12070121..12090119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040673942.2 → XP_040529876.1  Hermansky-Pudlak syndrome 5 protein isoform X1

    Conserved Domains (1) summary
    sd00039
    Location:41 → 76
    7WD40; WD40 repeat [structural motif]

  2. XM_040673943.2 → XP_040529877.1  Hermansky-Pudlak syndrome 5 protein isoform X2

    Conserved Domains (1) summary
    sd00039
    Location:41 → 76
    7WD40; WD40 repeat [structural motif]

RNA

  1. XR_005850906.2 RNA Sequence

  2. XR_005850905.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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