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LOC107063531 putative disease resistance protein At3g14460 [ Solanum tuberosum (potato) ]

Gene ID: 107063531, updated on 2-Nov-2023

Summary

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Gene symbol
LOC107063531
Gene description
putative disease resistance protein At3g14460
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC107063531 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006238943.1 (1799750..1805426)

NW_006238943.1Genomic Context describing neighboring genes Neighboring gene protein CLAVATA 3 Neighboring gene putative disease resistance RPP13-like protein 1 Neighboring gene putative disease resistance protein RGA3 Neighboring gene putative disease resistance protein At3g14460 Neighboring gene short-chain dehydrogenase/reductase 2b-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238943.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: putative disease resistance protein At3g14460

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006238943.1 Reference SolTub_3.0 Primary Assembly

    Range
    1799750..1805426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015315505.1 → XP_015170991.1  LOW QUALITY PROTEIN: putative disease resistance protein At3g14460

    Conserved Domains (6) summary
    cd00009
    Location:178 → 290
    AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
    cd14798
    Location:8 → 90
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:584 → 607
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:869 → 882
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00931
    Location:180 → 462
    NB-ARC; NB-ARC domain
    pfam13855
    Location:582 → 640
    LRR_8; Leucine rich repeat
Nucleotide Protein
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