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MTCO1P40 MT-CO1 pseudogene 40 [ Homo sapiens (human) ]

Gene ID: 107075172, updated on 10-Dec-2024

Summary

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Official Symbol
MTCO1P40provided by HGNC
Official Full Name
MT-CO1 pseudogene 40provided by HGNC
Primary source
HGNC:HGNC:52105
See related
Ensembl:ENSG00000262902 AllianceGenome:HGNC:52105
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See MTCO1P40 in Genome Data Viewer
Location:
17q22
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (53105734..53106358)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (53980967..53981591)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (51183095..51183719)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984983 Neighboring gene long intergenic non-protein coding RNA 2876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:51123434-51123934 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:51138562-51139451 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:51219872-51220372 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:51220373-51220873 Neighboring gene tubulin beta 6 class V pseudogene Neighboring gene phosphatidylinositol 4-kinase type 2 alpha pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • mitochondrially encoded cytochrome c oxidase I pseudogene 40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054740.1 

    Range
    101..725
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    53105734..53106358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    53980967..53981591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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