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LAPTM4BP2 lysosomal protein transmembrane 4 beta pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 107075219, updated on 17-Sep-2024

Summary

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Official Symbol
LAPTM4BP2provided by HGNC
Official Full Name
lysosomal protein transmembrane 4 beta pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:51935
See related
AllianceGenome:HGNC:51935
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LAPTM4BP2 in Genome Data Viewer
Location:
3p13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (72884232..72884879)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (72926107..72926754)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (72933383..72934030)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene SHQ1, H/ACA ribonucleoprotein assembly factor Neighboring gene U2SURP pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:72859919-72860421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20091 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20092 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20093 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14531 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14532 Neighboring gene PSMD12 pseudogene 1 Neighboring gene glucoside xylosyltransferase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20094 Neighboring gene ferritin heavy chain 1 pseudogene 23 Neighboring gene Sharpr-MPRA regulatory region 10271 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20095 Neighboring gene uncharacterized LOC124909395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20096 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14534 Neighboring gene protein phosphatase 4 regulatory subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046400.2 

    Range
    101..748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    72884232..72884879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    72926107..72926754
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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