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LOC107276689 pentatricopeptide repeat-containing protein At3g42630 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107276689, updated on 12-Jul-2024

Summary

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Gene symbol
LOC107276689
Gene description
pentatricopeptide repeat-containing protein At3g42630
Locus tag
OSNPB_080520200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1003_A09.11
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Genomic context

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See LOC107276689 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26002929..26005150, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25856978..25858869, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component EXO70I Neighboring gene probable mitochondrial adenine nucleotide transporter BTL1 Neighboring gene RNA pseudouridine synthase 3, mitochondrial-like Neighboring gene oligouridylate-binding protein 1B Neighboring gene methyltransferase-like protein 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At3g42630
Names
Os08g0520200
P0689E12.35
pentatricopeptide (PPR) repeat-containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    26002929..26005150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015794968.3 → XP_015650454.1  pentatricopeptide repeat-containing protein At3g42630

    UniProtKB/TrEMBL
    A0A0N7KQ57, Q6YZW3
    Conserved Domains (1) summary
    sd00004
    Location:281 → 307
    PPR; PPR repeat [structural motif]
Nucleotide Protein
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