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E330013P04Rik RIKEN cDNA E330013P04 gene [ Mus musculus (house mouse) ]

Gene ID: 107376, updated on 2-Nov-2024

Summary

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Official Symbol
E330013P04Rikprovided by MGI
Official Full Name
RIKEN cDNA E330013P04 geneprovided by MGI
Primary source
MGI:MGI:2147732
See related
AllianceGenome:MGI:2147732
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ln-CR9; 9930018I18Rik
Summary
Is expressed in cerebral cortex mantle layer; limb; sensory organ; and skeleton. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in limb E14.5 (RPKM 3.1), subcutaneous fat pad adult (RPKM 2.7) and 8 other tissues See more
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Genomic context

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See E330013P04Rik in Genome Data Viewer
Location:
19 D3; 19 56.52 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (60133107..60151023)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (60144675..60162591)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46663 Neighboring gene predicted gene, 41881 Neighboring gene STARR-seq mESC enhancer starr_46596 Neighboring gene STARR-positive B cell enhancer ABC_E8760 Neighboring gene family with sequence similarity 204, member A Neighboring gene STARR-positive B cell enhancer mm9_chr19:60302488-60302789 Neighboring gene STARR-positive B cell enhancer ABC_E5714 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60370481-60370782 Neighboring gene STARR-seq mESC enhancer starr_46597 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60386552-60386852 Neighboring gene predicted gene, 41882

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification of genes controlled by LMX1B in E13.5 mouse limbs. Gu WX, et al. Dev Dyn, 2010 Aug. PMID 20589901
  2. Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons. Li J, et al. PLoS Genet, 2021 Mar. PMID 33760820, Free PMC Article
  3. Transcriptional analysis of Gli3 mutants identifies Wnt target genes in the developing hippocampus. Hasenpusch-Theil K, et al. Cereb Cortex, 2012 Dec. PMID 22235033, Free PMC Article
  4. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026942.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK087735, BC076607

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    60133107..60151023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_175355.2: Suppressed sequence

    Description
    NM_175355.2: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
Nucleotide Protein Strain
Heading Accession and Version

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